PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G360600.1.p
Common NamePRUPE_ppa005813mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 443aa    MW: 48225.3 Da    PI: 8.3241
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G360600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.1e-115277227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        +++ C+++ rtG C++G++C+F+H+p
  Prupe.6G360600.1.p 52 GEPDCSYYIRTGLCRFGATCRFNHPP 77
                        5799********************97 PP

2zf-CCCH38.81.5e-1298122327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Prupe.6G360600.1.p  98 QPECQYYLKTGTCKFGATCKFHHPR 122
                         799********************96 PP

3zf-CCCH34.72.9e-11146168527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C +++rtG+Ck+G++Ck++H++
  Prupe.6G360600.1.p 146 ECAYYLRTGQCKFGSTCKYHHPQ 168
                         7********************97 PP

4zf-CCCH37.93e-12303329127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Prupe.6G360600.1.p 303 PGQPECQFYMKTGDCKFGAVCRFHHPR 329
                         5789*********************96 PP

5zf-CCCH40.15.9e-13349375127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF H++
  Prupe.6G360600.1.p 349 PGEPLCIFYSRYGICKFGPSCKFDHPM 375
                         589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2675078IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-55077IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-85277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55578IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-45676IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15995123IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-695122IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1098122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5101122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169141169IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6144169IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9146168IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4147167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596302330IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6302329IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9304329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5306332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5308330IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7348375IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709348376IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10350375IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5351375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4353373IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDFDAGIPMS RAAAPVTDAP SLSPSLTQDA MWQMNLRSSE TLEPGSYPER TGEPDCSYYI  60
RTGLCRFGAT CRFNHPPNRK LAIATARMKG EFPERIGQPE CQYYLKTGTC KFGATCKFHH  120
PRDKAGIAGR VALNILGYPL RPNEIECAYY LRTGQCKFGS TCKYHHPQPT NMMVSLRGSP  180
VYPTVQSPTT PGQQSYAGGI TNWSRASFIP SPRWQAPSSY APLIVPQGVV SVPGWSAYSG  240
QIGSVSSPES QQQPVGNSQI YGTSRQGEPE NSGSQGTFSS YRSGSIPVGF YALQRENVFP  300
ERPGQPECQF YMKTGDCKFG AVCRFHHPRE RLIPAPDCVL SPIGLPLRPG EPLCIFYSRY  360
GICKFGPSCK FDHPMGIFTY NPNASSSADA PARRLLGSTS ATTSLNLSPE GLVEAGSANP  420
RRLSLSEPRQ IPSGDDNIDT ED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.1340.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205202.10.0hypothetical protein PRUPE_ppa005813mg
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLM5VZ660.0M5VZ66_PRUPE; Uncharacterized protein
STRINGVIT_04s0023g00370.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1